Effect of genetically modified poplars on soil microbial communities during the phytoremediation of waste mine tailings.
Identifieur interne : 002F11 ( Main/Exploration ); précédent : 002F10; suivant : 002F12Effect of genetically modified poplars on soil microbial communities during the phytoremediation of waste mine tailings.
Auteurs : Moonsuk Hur [Corée du Sud] ; Yongho Kim ; Hae-Ryong Song ; Jong Min Kim ; Young Im Choi ; Hana YiSource :
- Applied and environmental microbiology [ 1098-5336 ] ; 2011.
Descripteurs français
- KwdFr :
- ADN bactérien (composition chimique), ADN bactérien (génétique), ADN des archées (composition chimique), ADN des archées (génétique), ADN ribosomique (composition chimique), ADN ribosomique (génétique), ARN bactérien (génétique), ARN des archées (génétique), ARN ribosomique 16S (génétique), Analyse de regroupements (MeSH), Analyse de séquence d'ADN (MeSH), Archéobactéries (classification), Archéobactéries (génétique), Archéobactéries (isolement et purification), Bactéries (classification), Bactéries (génétique), Bactéries (isolement et purification), Biodiversité (MeSH), Dépollution biologique de l'environnement (MeSH), Gènes d'ARN ribosomique (MeSH), Microbiologie du sol (MeSH), Organismes génétiquement modifiés (MeSH), Phylogenèse (MeSH), Populus (génétique), Populus (métabolisme), Rhizosphère (MeSH), Similitude de séquences d'acides nucléiques (MeSH).
- MESH :
- composition chimique : ADN bactérien, ADN des archées, ADN ribosomique, Archéobactéries, Bactéries.
- génétique : ADN bactérien, ADN des archées, ADN ribosomique, ARN bactérien, ARN des archées, ARN ribosomique 16S, Archéobactéries, Bactéries, Populus.
- isolement et purification : Archéobactéries, Bactéries.
- métabolisme : Populus.
- Analyse de regroupements, Analyse de séquence d'ADN, Biodiversité, Dépollution biologique de l'environnement, Gènes d'ARN ribosomique, Microbiologie du sol, Organismes génétiquement modifiés, Phylogenèse, Rhizosphère, Similitude de séquences d'acides nucléiques.
English descriptors
- KwdEn :
- Archaea (classification), Archaea (genetics), Archaea (isolation & purification), Bacteria (classification), Bacteria (genetics), Bacteria (isolation & purification), Biodegradation, Environmental (MeSH), Biodiversity (MeSH), Cluster Analysis (MeSH), DNA, Archaeal (chemistry), DNA, Archaeal (genetics), DNA, Bacterial (chemistry), DNA, Bacterial (genetics), DNA, Ribosomal (chemistry), DNA, Ribosomal (genetics), Genes, rRNA (MeSH), Organisms, Genetically Modified (MeSH), Phylogeny (MeSH), Populus (genetics), Populus (metabolism), RNA, Archaeal (genetics), RNA, Bacterial (genetics), RNA, Ribosomal, 16S (genetics), Rhizosphere (MeSH), Sequence Analysis, DNA (MeSH), Sequence Homology, Nucleic Acid (MeSH), Soil Microbiology (MeSH).
- MESH :
- chemical , chemistry : DNA, Archaeal, DNA, Bacterial, DNA, Ribosomal.
- classification : Archaea, Bacteria.
- genetics : Archaea, Bacteria, DNA, Archaeal, DNA, Bacterial, DNA, Ribosomal, Populus, RNA, Archaeal, RNA, Bacterial, RNA, Ribosomal, 16S.
- isolation & purification : Archaea, Bacteria.
- metabolism : Populus.
- Biodegradation, Environmental, Biodiversity, Cluster Analysis, Genes, rRNA, Organisms, Genetically Modified, Phylogeny, Rhizosphere, Sequence Analysis, DNA, Sequence Homology, Nucleic Acid, Soil Microbiology.
Abstract
The application of transgenic plants to clean up environmental pollution caused by the wastes of heavy metal mining is a promising method for removing metal pollutants from soils. However, the effect of using genetically modified organisms for phytoremediation is a poorly researched topic in terms of microbial community structures, despite the important role of microorganisms in the health of soil. In this study, a comparative analysis of the bacterial and archaeal communities found in the rhizosphere of genetically modified (GM) versus wild-type (WT) poplar was conducted on trees at different growth stages (i.e., the rhizospheres of 1.5-, 2.5-, and 3-year-old poplars) that were cultivated on contaminated soils together with nonplanted control soil. Based on the results of DNA pyrosequencing, poplar type and growth stages were associated with directional changes in the structure of the microbial community. The rate of change was faster in GM poplars than in WT poplars, but the microbial communities were identical in the 3-year-old poplars. This phenomenon may arise because of a higher rate and greater extent of metal accumulation in GM poplars than in naturally occurring plants, which resulted in greater changes in soil environments and hence the microbial habitat.
DOI: 10.1128/AEM.06102-11
PubMed: 21890678
PubMed Central: PMC3209168
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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However, the effect of using genetically modified organisms for phytoremediation is a poorly researched topic in terms of microbial community structures, despite the important role of microorganisms in the health of soil. In this study, a comparative analysis of the bacterial and archaeal communities found in the rhizosphere of genetically modified (GM) versus wild-type (WT) poplar was conducted on trees at different growth stages (i.e., the rhizospheres of 1.5-, 2.5-, and 3-year-old poplars) that were cultivated on contaminated soils together with nonplanted control soil. Based on the results of DNA pyrosequencing, poplar type and growth stages were associated with directional changes in the structure of the microbial community. The rate of change was faster in GM poplars than in WT poplars, but the microbial communities were identical in the 3-year-old poplars. This phenomenon may arise because of a higher rate and greater extent of metal accumulation in GM poplars than in naturally occurring plants, which resulted in greater changes in soil environments and hence the microbial habitat.</div></front></TEI><pubmed><MedlineCitation Status="MEDLINE" Owner="NLM"><PMID Version="1">21890678</PMID><DateCompleted><Year>2012</Year><Month>02</Month><Day>07</Day></DateCompleted><DateRevised><Year>2018</Year><Month>11</Month><Day>13</Day></DateRevised><Article PubModel="Print-Electronic"><Journal><ISSN IssnType="Electronic">1098-5336</ISSN><JournalIssue CitedMedium="Internet"><Volume>77</Volume><Issue>21</Issue><PubDate><Year>2011</Year><Month>Nov</Month></PubDate></JournalIssue><Title>Applied and environmental microbiology</Title><ISOAbbreviation>Appl Environ Microbiol</ISOAbbreviation></Journal><ArticleTitle>Effect of genetically modified poplars on soil microbial communities during the phytoremediation of waste mine tailings.</ArticleTitle><Pagination><MedlinePgn>7611-9</MedlinePgn></Pagination><ELocationID EIdType="doi" ValidYN="Y">10.1128/AEM.06102-11</ELocationID><Abstract><AbstractText>The application of transgenic plants to clean up environmental pollution caused by the wastes of heavy metal mining is a promising method for removing metal pollutants from soils. However, the effect of using genetically modified organisms for phytoremediation is a poorly researched topic in terms of microbial community structures, despite the important role of microorganisms in the health of soil. In this study, a comparative analysis of the bacterial and archaeal communities found in the rhizosphere of genetically modified (GM) versus wild-type (WT) poplar was conducted on trees at different growth stages (i.e., the rhizospheres of 1.5-, 2.5-, and 3-year-old poplars) that were cultivated on contaminated soils together with nonplanted control soil. Based on the results of DNA pyrosequencing, poplar type and growth stages were associated with directional changes in the structure of the microbial community. The rate of change was faster in GM poplars than in WT poplars, but the microbial communities were identical in the 3-year-old poplars. This phenomenon may arise because of a higher rate and greater extent of metal accumulation in GM poplars than in naturally occurring plants, which resulted in greater changes in soil environments and hence the microbial habitat.</AbstractText></Abstract><AuthorList CompleteYN="Y"><Author ValidYN="Y"><LastName>Hur</LastName><ForeName>Moonsuk</ForeName><Initials>M</Initials><AffiliationInfo><Affiliation>Biosafety Research Team, Environmental Health Research Department, National Institute of Environmental Research, Incheon 404-708, Republic of Korea.</Affiliation></AffiliationInfo></Author><Author ValidYN="Y"><LastName>Kim</LastName><ForeName>Yongho</ForeName><Initials>Y</Initials></Author><Author ValidYN="Y"><LastName>Song</LastName><ForeName>Hae-Ryong</ForeName><Initials>HR</Initials></Author><Author ValidYN="Y"><LastName>Kim</LastName><ForeName>Jong Min</ForeName><Initials>JM</Initials></Author><Author ValidYN="Y"><LastName>Choi</LastName><ForeName>Young Im</ForeName><Initials>YI</Initials></Author><Author ValidYN="Y"><LastName>Yi</LastName><ForeName>Hana</ForeName><Initials>H</Initials></Author></AuthorList><Language>eng</Language><PublicationTypeList><PublicationType UI="D016428">Journal Article</PublicationType><PublicationType UI="D013485">Research Support, Non-U.S. Gov't</PublicationType></PublicationTypeList><ArticleDate DateType="Electronic"><Year>2011</Year><Month>09</Month><Day>02</Day></ArticleDate></Article><MedlineJournalInfo><Country>United States</Country><MedlineTA>Appl Environ Microbiol</MedlineTA><NlmUniqueID>7605801</NlmUniqueID><ISSNLinking>0099-2240</ISSNLinking></MedlineJournalInfo><ChemicalList><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D019641">DNA, Archaeal</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004269">DNA, Bacterial</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D004275">DNA, Ribosomal</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D019642">RNA, Archaeal</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012329">RNA, Bacterial</NameOfSubstance></Chemical><Chemical><RegistryNumber>0</RegistryNumber><NameOfSubstance UI="D012336">RNA, Ribosomal, 16S</NameOfSubstance></Chemical></ChemicalList><CitationSubset>IM</CitationSubset><MeshHeadingList><MeshHeading><DescriptorName UI="D001105" MajorTopicYN="N">Archaea</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D001419" MajorTopicYN="N">Bacteria</DescriptorName><QualifierName UI="Q000145" MajorTopicYN="Y">classification</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName><QualifierName UI="Q000302" MajorTopicYN="N">isolation & purification</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D001673" MajorTopicYN="N">Biodegradation, Environmental</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D044822" MajorTopicYN="Y">Biodiversity</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D016000" MajorTopicYN="N">Cluster Analysis</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D019641" MajorTopicYN="N">DNA, Archaeal</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004269" MajorTopicYN="N">DNA, Bacterial</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D004275" MajorTopicYN="N">DNA, Ribosomal</DescriptorName><QualifierName UI="Q000737" MajorTopicYN="N">chemistry</QualifierName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D020459" MajorTopicYN="N">Genes, rRNA</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D030781" MajorTopicYN="Y">Organisms, Genetically Modified</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D010802" MajorTopicYN="N">Phylogeny</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D032107" MajorTopicYN="N">Populus</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName><QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D019642" MajorTopicYN="N">RNA, Archaeal</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012329" MajorTopicYN="N">RNA, Bacterial</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D012336" MajorTopicYN="N">RNA, Ribosomal, 16S</DescriptorName><QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName></MeshHeading><MeshHeading><DescriptorName UI="D058441" MajorTopicYN="Y">Rhizosphere</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D017422" MajorTopicYN="N">Sequence Analysis, DNA</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012689" MajorTopicYN="N">Sequence Homology, Nucleic Acid</DescriptorName></MeshHeading><MeshHeading><DescriptorName UI="D012988" MajorTopicYN="Y">Soil Microbiology</DescriptorName></MeshHeading></MeshHeadingList></MedlineCitation><PubmedData><History><PubMedPubDate PubStatus="entrez"><Year>2011</Year><Month>9</Month><Day>6</Day><Hour>6</Hour><Minute>0</Minute></PubMedPubDate><PubMedPubDate 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